Publications

1. Ribosome Decision Graphs for the Representation of Eukaryotic RNA Translation Complexity (2023)
   Description: A novel abstraction to represent the complexity of mRNA translation, capturing multiple ribosome paths through untranslated and translated mRNA segments
   Authors: Jack A. S. Tierney, Michał Świrski,… Pavel V Baranov
   Link: https://doi.org/10.1101/2023.11.10.566564

2. RiboGalaxy: A Galaxy-based Web Platform for Ribosome Profiling Data Processing - 2023 Update
   Description: a Galaxy-based platform specifically designed for processing and analysing ribosome profiling (Ribo-Seq) data
   Authors: Alla D Fedorova, Jack A S Tierney, Audrey M Michel, Pavel V Baranov
   Link: https://doi.org/10.1016/j.jmb.2023.168043

Ongoing Work

1. Ribo-Seq Data Portal: Empowering Large-Scale Translation Reanalysis through Access to Pre-processed Samples and Standardised Metadata
   Description: Standardised, pre-processed Ribo-Seq data sets with curated metadata facilitating large-scale analysis for researchers of all computational aptitudes.
   Authors: Jack A S Tierney, Michał Świrski, Håkon Tjeldnes,… Pavel V Baranov
   Link: Manuscript In Development - https://github.com/riboseqorg/RiboSeqOrg-DataPortal

2. RiboMetric: A python command-line utility for the generation of comprehensive reports on the quality of ribosome profiling (Ribo-Seq) datasets
   Description: Ribosome Profiling data quality reporting and assessment using standalone metrics
   Authors: Jack A S Tierney, Lukas Weirdsma,… Pavel V Baranov
   Link: Manuscript In Development - https://github.com/JackCurragh/RiboMetric

3. RDG: A python package for the construction of Ribosome Decision Graphs
   Description: Python package and command line application that enables the construction of Ribosome Decision Graphs
   Authors: Jack A S Tierney, Pavel V Baranov
   Link: Manuscript In Development - https://github.com/JackCurragh/RDG