Publications

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2025

• Świrski, Tierney et al. (2025). Translon: a single term for translated regions. Nature Methods. doi:10.1038/s41592-025-02810-3
• Tierney et al. (2025). RiboSeq.Org: an integrated suite of resources for ribosome profiling data analysis and visualization. Nucleic Acids Research 53(D1): D268-D274.
• Chothani, Ruiz-Orera, Tierney et al. (2025). An expanded reference catalog of translated open reading frames for biomedical research. bioRxiv. doi:10.1101/2025.07.03.662928

2024

• Tierney, Świrski, Tjeldnes et al. (2024). Ribosome decision graphs for the representation of eukaryotic RNA translation complexity. Genome Research 34(4): 530-538.
• Andreev, Tierney, Baranov (2024). Translation complex profile sequencing allows discrimination of leaky scanning and reinitiation in upstream open reading frame-controlled translation. Journal of Molecular Biology 436(23): 168850.
• Yordanova et al. (2024). Triple coding in human SRD5A1 mRNA. Research Square.
• Tierney (2024). Representing translation: concepts, methods, and resources for protein coding loci representation and ribosome profiling data analysis. PhD Thesis, University College Cork.

2023

• Fedorova, Tierney, Michel, Baranov (2023). RiboGalaxy: a galaxy-based web platform for ribosome profiling data processing–2023 update. Journal of Molecular Biology 435(14): 168043. doi:10.1016/j.jmb.2023.168043